RnoEX6045696 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100896139-100899615:-
Coord C1 exon
chr13:100899541-100899615
Coord A exon
chr13:100898291-100898451
Coord C2 exon
chr13:100896139-100896308
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTCTGCTTTGCTAGGAT
3' ss Score
8
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGCCCCAGCTGGAACACGGTTGACCCAGAAGTAAGGGCAAATCTAACAGAACGGCAGGAGGACGGAGAATTCTG
Seq A exon
GATGTCCTTCAGTGACTTCCTGAGGCACTACTCTCGTCTAGAAATCTGCAACCTGACCCCGGACACCCTCACCTGTGACTCCTACAAGAAGTGGAAACTCACCAAGATGGATGGGAACTGGAGGCGAGGCTCCACTGCAGGGGGCTGCAGGAATTACCCAA
Seq C2 exon
ATACCTTCTGGATGAACCCTCAGTACCTAATCAAGCTGGAGGAAGAAGATGAAGATGATGAGGATGGGGAGAGGGGCTGTACCTTCCTGGTGGGCCTCATCCAGAAGCATCGGCGGCGGCAGAGGAAGATGGGTGAGGACATGCACACCATTGGCTTCGGCATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
C2:
PF0106717=Calpain_III=FE(35.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCCAGCTGGAACAC
R:
ATAGATGCCGAAGCCAATGGTG
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]