GgaEX0013765 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17029564-17030569:-
Coord C1 exon
chr3:17030495-17030569
Coord A exon
chr3:17030161-17030321
Coord C2 exon
chr3:17029564-17029737
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTTGGCATTGCCTCCCCCAGGAT
3' ss Score
6.64
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CTGCCCAAACTGGAGTGGTGTTGACCCAGAGGTGCGGGAGCGGCTGACGAGGAGACATGAGGATGGGGAGTTTTG
Seq A exon
GATGGCCTTCAATGACTTCCTGAGGCACTACTCCCGCCTGGAAATCTGCAATCTGACTCCAGACACTCTGGCAAGTGACAGGTACAAGAAGTGGAGCCTGCTGAAGCTGGATGGGAACTGGCGGCGAGGAGCTACTGCGGGGGGCTGCAGGAATTACCCAA
Seq C2 exon
ACACTTTCTGGACGAATCCACAGTATTTAATCAAGCTGGAGGAAGAAGATGAGGATCCTGATGATCCTGAGGGGGGCTGCACATTTCTCATTGGCCTGATTCAGAAGCATCGGAGGAAGCAGAGGAAGATGGGAGAGGACATGCATACCATTGGCTTTGCAATTTATGAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'15-13,'15-12,16-13
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
C2:
PF0106717=Calpain_III=FE(37.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGAGTGGTGTTGACCC
R:
TGCCTCATAAATTGCAAAGCCA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]