MmuEX6029808 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182484203-182487789:-
Coord C1 exon
chr1:182487715-182487789
Coord A exon
chr1:182486544-182486704
Coord C2 exon
chr1:182484203-182484372
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCTGTGCTTTGCTAGGAT
3' ss Score
8.97
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTGCCCCAGCTGGAACACGGTTGACCCAGAAGTAAGGGCAAATCTAACCGAACGGCAGGAGGACGGAGAATTCTG
Seq A exon
GATGTCCTTCAGTGACTTCCTGAGACACTACTCTCGCCTGGAGATCTGCAACCTGACCCCGGACACCCTCACCTGTGACTCCTATAAGAAGTGGAAACTCACCAAGATGGATGGGAACTGGAGGCGAGGCTCCACCGCAGGGGGCTGCAGGAATTACCCAA
Seq C2 exon
ATACCTTCTGGATGAACCCTCAGTACCTAATTAAGCTGGAGGAAGAAGACGAAGATGAGGAGGATGGGGAGAGAGGCTGTACCTTCCTGGTGGGTCTCATCCAGAAGCACCGGCGACGGCAGAGGAAGATGGGCGAGGACATGCACACCATTGGCTTCGGCATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'17-17,'17-15,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
C2:
PF0106717=Calpain_III=FE(35.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCCAGCTGGAACAC
R:
ATAGATGCCGAAGCCAATGGTG
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types