BtaEX6067948 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27701100-27705281:-
Coord C1 exon
chr16:27705207-27705281
Coord A exon
chr16:27704326-27704486
Coord C2 exon
chr16:27701100-27701275
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTGATCCCTTTGCCCCCAGGAT
3' ss Score
10.08
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGCACCGGAGTGGAATTACATAGACCCCAGGCAGAAAGAACAGCTGGGCAAGAAAGCCGAGGATGGAGAGTTTTG
Seq A exon
GATGTCTTTTTCGGATTTCTTGAGGCAGTTCTCTCGGCTGGAGATCTGCAACCTGTCCCTGGACTCATTGAGCAGCGAGGAGGCGCACAAGTGGAGCCTGGTGCTGTTCAATGGGCGCTGGACTCGGGGCTCCACAGCTGGAGGCTGCCAGAACTACCCAG
Seq C2 exon
CCACTTACTGGACCAATCCCCAGTTCAAAATCCATTTGGACGAGGTGGATGATCACCAGGAGGAGGGCGTCAGTGAACCCTGCTGCACGGTACTGCTGGGGCTGATGCAGAAGAATCGCCGGCGACAGAAGAGGATGGGACAGGGCATGCTCAGCATCGGCTATGCTGTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'12-15,'12-12,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.030 C2=0.051
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
C2:
PF0106717=Calpain_III=FE(36.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCGGAGTGGAATTACAT
R:
CTTGTAGACAGCATAGCCGATG
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]