GgaEX1012822 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18837775-18839887:+
Coord C1 exon
chr3:18837775-18837849
Coord A exon
chr3:18838840-18839000
Coord C2 exon
chr3:18839712-18839887
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATGGTCTTTCTGTGCTCTAGGAT
3' ss Score
10.38
5' ss Seq
CAGGTGTAG
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGCTCCCGAATGGAATTATATTGATCCCAAACAAAAGCAGGCTCTGGATAAGCAAGTAGATGATGGAGAATTTTG
Seq A exon
GATGGCGTTTTCTGATTTTCAAAGGCAGTTCACCCGTCTGGAGATCTGCAACCTGACTCCTGACACACTGACAAGCAATCAGGTCAACAAATGGGACCTGACCATGTTCAATGGACAGTGGATACGGGGTTCAACAGCTGGAGGTTGCCAGAACTACCCAG
Seq C2 exon
CAACATACTGGATCAATCCCCAGTTTAAAATCCGGCTGGATGAACCAGATGATGATCATGAAGGGAGTTTGAATGAGCCATGCTGTACTATATTGGTGGGCTTGATGCAGAAGAACCGCAGGAGACAGAAGAGAATGGGAGAAGGTCTGCTTAGTATTGGTTATTCACTCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(8.9=92.6)
A:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
C2:
PF0106717=Calpain_III=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCGAATGGAATTATATTGA
R:
GTGAATAACCAATACTAAGCAGACCT
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]