GgaEX1012822 @ galGal4
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17060335-17062447:+
Coord C1 exon
chr3:17060335-17060409
Coord A exon
chr3:17061400-17061560
Coord C2 exon
chr3:17062272-17062447
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATGGTCTTTCTGTGCTCTAGGAT
3' ss Score
10.38
5' ss Seq
CAGGTGTAG
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGCTCCCGAATGGAATTATATTGATCCCAAACAAAAGCAGGCTCTGGATAAGCAAGTAGATGATGGAGAATTTTG
Seq A exon
GATGGCGTTTTCTGATTTTCAAAGGCAGTTCACCCGTCTGGAGATCTGCAACCTGACTCCTGACACACTGACAAGCAATCAGGTCAACAAATGGGACCTGACCATGTTCAATGGACAGTGGATACGGGGTTCAACAGCTGGAGGTTGCCAGAACTACCCAG
Seq C2 exon
CAACATACTGGATCAATCCCCAGTTTAAAATCCGGCTGGATGAACCAGATGATGATCATGAAGGGAGTTTGAATGAGCCATGCTGTACTATATTGGTGGGCTTGATGCAGAAGAACCGCAGGAGACAGAAGAGAATGGGAGAAGGTCTGCTTAGTATTGGTTATTCACTCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'12-12,'12-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.6=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCGAATGGAATTATATTGA
R:
GTGAATAACCAATACTAAGCAGACCT
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]