DreEX6059989 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6181082-6183534:-
Coord C1 exon
chr13:6183497-6183534
Coord A exon
chr13:6181274-6181436
Coord C2 exon
chr13:6181082-6181159
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTGCTTGTTTTTAGAAA
3' ss Score
9.38
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AAAAACAGAACCTTGGTAATGACAAGCATGCCTACTGA
Seq A exon
AAAACAGGAGGTAGTCTTCAAGGTGATCAGAAATCTGGGTGGTTTTACTGTGGTGGATGATGTGTGTGAGAGCACCTCTCATGTGGTGTCTGGCAGCCCACGGCGGACTGTTAATATCTTGTTAGGCATCGCACGGGGATGCTGGATCCTCTCCTTTGAATGG
Seq C2 exon
ATCATGTGGTGTTTAGAGCACCAGCAGTGGGTTTCTGAAGAGCCTTTTGAGCTGTCTGAACATTTTCCAGCTGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372-'14-15,'14-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=FE(16.2=100)
A:
PF0053321=BRCT=FE(73.0=100)
C2:
PF0053321=BRCT=PD(5.4=15.4)
Main Skipping Isoform:
ENSDART00000148907fB3783
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGAACCTTGGTAATGACAAGC
R:
AGGTGCAGCTGGAAAATGTTCA
Band lengths:
114-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]