GgaEX6032028 @ galGal3
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
NA
Coordinates
chr3:91452406-91461173:-
Coord C1 exon
chr3:91461136-91461173
Coord A exon
chr3:91458108-91458270
Coord C2 exon
chr3:91452406-91452483
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGCTCTTTTTAGGAA
3' ss Score
12.21
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCAACAAGGACACTAGTCATGACCAGTATGTCTTCTGA
Seq A exon
GAAACAAAGTATGGTAATTCAGGTGGTGAATAAACTTGGAGACTTCTTGTTCTCAGATGATGTATGTGAAACAACAAGTCATGTAGTTACAGGGAGTCCTCGTCGTACCTTGAATGTTATGCTGGGAATTGCTCGTGGGTGTTGGATTGTTTCTTATGAATGG
Seq C2 exon
GTTCTGTGTTCTTTGGAATTTGGGCACTGGATCTCAGAGGAACCATATGAACTTTCTTCCAACTTCCCAGCTGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'41-45,'41-43,42-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(13.0=69.2)
A:
PF0053321=BRCT=FE(78.3=100)
C2:
PF0053321=BRCT=PD(5.8=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAAGGACACTAGTCATGACC
R:
GAGCAGCTGGGAAGTTGGAAG
Band lengths:
114-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]