GgaEX6032028 @ galGal4
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
microcephalin [Source:RefSeq peptide;Acc:NP_001098789]
Coordinates
chr3:88050295-88059062:-
Coord C1 exon
chr3:88059025-88059062
Coord A exon
chr3:88055997-88056159
Coord C2 exon
chr3:88050295-88050372
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGCTCTTTTTAGGAA
3' ss Score
12.21
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCAACAAGGACACTAGTCATGACCAGTATGTCTTCTGA
Seq A exon
GAAACAAAGTATGGTAATTCAGGTGGTGAATAAACTTGGAGACTTCTTGTTCTCAGATGATGTATGTGAAACAACAAGTCATGTAGTTACAGGGAGTCCTCGTCGTACCTTGAATGTTATGCTGGGAATTGCTCGTGGGTGTTGGATTGTTTCTTATGAATGG
Seq C2 exon
GTTCTGTGTTCTTTGGAATTTGGGCACTGGATCTCAGAGGAACCATATGAACTTTCTTCCAACTTCCCAGCTGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'15-18,'15-14,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=FE(12.5=100)
A:
PF0053321=BRCT=FE(56.2=100)
C2:
PF0053321=BRCT=PD(4.2=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAAGGACACTAGTCATGACC
R:
GAGCAGCTGGGAAGTTGGAAG
Band lengths:
114-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]