RnoEX0053273 @ rn6
Exon Skipping
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:76018333-76047775:-
Coord C1 exon
chr16:76047738-76047775
Coord A exon
chr16:76045442-76045604
Coord C2 exon
chr16:76018333-76018410
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCTGATTCTCTGGCCCACAGGCA
3' ss Score
8.68
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CCAACGAGAACATTAGTCATGACAAGCATGCCGTCTGA
Seq A exon
GCAGCAGGACCTCATCATCCAGGTGGTGAGCACACTGAGAGGCTTTTCATTCGCCCCTGAGGTCTGCGAGTCCACCACCCACGTGCTGGTGGGGAAGTCTGTCCGTACCCTGAACGTGCTGATGGGGATTGCACGAGGTTGCTGGATTCTTTCTTACCAATGG
Seq C2 exon
GTTCTGTTGTCTTTAGAGTTGGGTCACTGGATTTCTGAGGAGCCTTTTGAACTCTTTGAAACCTTCCCTGCAGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586-'14-12,'14-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053321=BRCT=PU(11.8=61.5)
A:
PF0053321=BRCT=FE(79.4=100)
C2:
PF0053321=BRCT=PD(5.9=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGAGAACATTAGTCATGACA
R:
GAGCTGCAGGGAAGGTTTCAA
Band lengths:
114-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]