DreEX6062540 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36221081-36225656:-
Coord C1 exon
chr13:36225578-36225656
Coord A exon
chr13:36223793-36223874
Coord C2 exon
chr13:36221081-36221166
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTGGTTTCTCTCAGGAC
3' ss Score
10.06
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTGGAAGGATGGATTGGGCTTCTGTGCGCTCATTCACAGACATCGGCCAGAGCTCATCGATTACAATAAACTGCGCAAG
Seq A exon
GACGACCCCATGACGAATCTGAACACGGCCTTCGATGTTGCTGAGAAGTATCTGGACATCCCGAAGATGCTGGACGCAGAAG
Seq C2 exon
ATATTGTTGGTACGGCCCGTCCCGATGAGAAGGCCATCATGACCTACGTTTCTAGCTTCTACCATGCCTTCTCCGGGGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'8-8,'8-7,9-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.0=100)
A:
PF0030726=CH=FE(26.0=100)
C2:
PF0030726=CH=PD(23.1=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGGATGGATTGGGCTTC
R:
CGGAGAAGGCATGGTAGAAGC
Band lengths:
153-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]