GgaEX1006132 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27541817-27555736:+
Coord C1 exon
chr5:27541817-27541895
Coord A exon
chr5:27547033-27547114
Coord C2 exon
chr5:27555644-27555736
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTGTTTCTTTCCCAGGAT
3' ss Score
10.36
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTGGAAAGATGGCCTTGGTTTCTGCGCTTTAATTCACAGACATCGTCCAGAGCTCATTGATTACGGGAAGCTACGAAAG
Seq A exon
GATGATCCTCTCACTAATCTAAACACAGCCTTTGATGTAGCTGAAAAATATCTGGATATCCCCAAGATGCTGGATGCAGAAG
Seq C2 exon
GCGGAGACAGCAGCAAATCGTATTTGCAAGGTTCTGGCAGTCAACCAAGAGAATGAACAGCTCATGGAAGACTATGAAAAACTGGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474_MULTIEX3-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.0=100)
A:
PF0030726=CH=FE(26.0=100)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGCCTTGGTTTCTGCG
R:
ATCACTGGCCAGTTTTTCATAGTCT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]