GgaEX1006132 @ galGal3
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1_CHICK
Description
NA
Coordinates
chr5:30557669-30564654:+
Coord C1 exon
chr5:30557669-30557747
Coord A exon
chr5:30562885-30562966
Coord C2 exon
chr5:30564569-30564654
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTGTTTCTTTCCCAGGAT
3' ss Score
10.36
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TTGGAAAGATGGCCTTGGTTTCTGCGCTTTAATTCACAGACATCGTCCAGAGCTCATTGATTACGGGAAGCTACGAAAG
Seq A exon
GATGATCCTCTCACTAATCTAAACACAGCCTTTGATGTAGCTGAAAAATATCTGGATATCCCCAAGATGCTGGATGCAGAAG
Seq C2 exon
ACATTGTTGGAACTGCCCGTCCTGACGAGAAAGCCATCATGACCTATGTTTCTAGCTTCTACCACGCCTTCTCAGGAGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474-'10-13,'10-10,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.0=100)
A:
PF0030726=CH=FE(26.0=100)
C2:
PF0030726=CH=PD(23.1=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGCCTTGGTTTCTGCG
R:
CTTCTGGGCTCCTGAGAAGGC
Band lengths:
160-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]