MmuEX6081844 @ mm9
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:81293355-81297460:-
Coord C1 exon
chr12:81297382-81297460
Coord A exon
chr12:81294623-81294704
Coord C2 exon
chr12:81293355-81293440
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGCTTTCTCCTTTAGGAT
3' ss Score
13.7
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTGGAAAGATGGTCTTGGTTTCTGTGCCTTGATCCACCGACACCGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAG
Seq A exon
GATGATCCACTCACAAACCTGAACACGGCCTTTGATGTGGCAGAGAGGTTCCTGGACATCCCTAAGATGCTGGATGCTGAAG
Seq C2 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACTTATGTGTCTAGCTTCTATCATGCCTTCTCTGGAGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'14-7,'14-6,15-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.0=100)
A:
PF0030726=CH=FE(26.0=100)
C2:
PF0030726=CH=PD(23.1=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGATGGTCTTGGTTTCTGT
R:
GGGCTCCAGAGAAGGCATGAT
Band lengths:
159-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: