RnoEX6029193 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103401041-103405148:-
Coord C1 exon
chr6:103405070-103405148
Coord A exon
chr6:103402296-103402377
Coord C2 exon
chr6:103401041-103401126
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTGGTCCTTTTCTCCTTTAGGAT
3' ss Score
12.55
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TTGGAAGGATGGTCTTGGTTTCTGTGCCTTGATCCACCGGCACCGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAG
Seq A exon
GATGATCCACTCACAAACCTGAACACAGCCTTTGATGTGGCAGAGAGATACCTGGACATTCCAAAGATGCTGGATGCAGAAG
Seq C2 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACCTATGTGTCTAGCTTCTACCATGCCTTCTCTGGAGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'18-9,'18-8,19-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.0=100)
A:
PF0030726=CH=FE(26.0=100)
C2:
PF0030726=CH=PD(23.1=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAAGGATGGTCTTGGTTTCTG
R:
GGCTCCAGAGAAGGCATGGTA
Band lengths:
159-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]