DreEX6062873 @ danRer10
Exon Skipping
Gene
ENSDARG00000014101 | pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:ZFIN;Acc:ZDB-GENE-050506-147]
Coordinates
chr13:40185683-40189459:-
Coord C1 exon
chr13:40189366-40189459
Coord A exon
chr13:40187721-40187794
Coord C2 exon
chr13:40185683-40185838
Length
74 bp
Sequences
Splice sites
3' ss Seq
GAATTGCCTGTCTATTTCAGGGT
3' ss Score
9.12
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
TCAGCATATCTGCAGAAGGGAGGCCTGAGAACAGCAGTGCTGGAGCGCAGACATGTGCTTGGGGGAGCAGCTGTGTCTGAAGAGATCATTCCAG
Seq A exon
GGTTTCACTTCTCCAGGGCCTCCTATCTGCTTAGTTTATTACGTCCACACATCTACCAGGACCTGGAGCTTAAG
Seq C2 exon
AAACATGGCCTGAAGGTTTACATGAGGGACCCCTATTCATTTACCCCCATGCTGGAGGATGGTGTAGGAGGGCGACCACCGCGGTCTTTACTGCTCGGATCTGACCTGACAAATACGCGGCAAGAGATTGGCAAATTCTCTGAGAAAGACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014101-'3-8,'3-3,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(47.7=100)
A:
PF134501=NAD_binding_8=PD(33.8=88.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGGAGGCCTGAGAACAG
R:
GATCCGAGCAGTAAAGACCGC
Band lengths:
182-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]