RnoEX0071863 @ rn6
Exon Skipping
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261976147-261981645:-
Coord C1 exon
chr1:261981552-261981645
Coord A exon
chr1:261981400-261981473
Coord C2 exon
chr1:261976147-261976302
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGCTTTGGTTCCAGGAT
3' ss Score
9.74
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
GCAGCGTACCTCCAGAGACTAGGGGTGAACACCGCGGTCTTCGAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCCTG
Seq A exon
GATTCAAGTTCTCCCGAGCGTCCTATCTCCTCAGCTTACTGAGGCCCCAGATTTACACAGACCTGGAGCTGAAG
Seq C2 exon
AAACATGGGCTGAAACTTCATCTGAGAAATCCCTACTCCTTCACCCCCATGCTGGAGGAGGGCACGCTGAGCAAGCCGCCCAGGTCCCTCCTGCTGGGCACAGACGTGGCTGAAAACCAGAAGCAAATCTCTCAGTTCTCCCGGAAGGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(48.4=100)
A:
PF134501=NAD_binding_8=PD(32.8=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCTGTCACTGAGGAGAT
R:
CCTTCCGGGAGAACTGAGAGA
Band lengths:
177-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]