GgaEX1047486 @ galGal3
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23674612-23675084:+
Coord C1 exon
chr6:23674612-23674705
Coord A exon
chr6:23674778-23674851
Coord C2 exon
chr6:23674938-23675084
Length
74 bp
Sequences
Splice sites
3' ss Seq
CACCACCCCGTGTTCTCCAGGCT
3' ss Score
6.61
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCTGCCTATCTGCAGCAGGCAGGGCTGCGCACGGCTGTGCTGGAGAAACGCCATGTGCTGGGTGGCGCGGCTGTTACTGAGGAGATTGTGCCAG
Seq A exon
GCTTTAGGTTCTCCAGGGCTTCCTACCTGCTCAGCCTGCTGCGCCCGCAGATCTACACAGAGCTGGAGCTGCAG
Seq C2 exon
CGGCATGGGCTGAAAGTGCTGCCACGGGACCCCTACTCCTTCACCCCGCTGCTGGAGGACAGGAGCCCGCCCCGCTCCTTGCTGATGGGCCATGATATGGCCCAGACCCGGAGGCAGATTGCCCAGTTCTCCCAGAAGGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(48.4=100)
A:
PF134501=NAD_binding_8=PD(32.8=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTGTTACTGAGGAGATT
R:
CCTTCTGGGAGAACTGGGCAA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]