MmuEX6032963 @ mm10
Exon Skipping
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42742508-42747590:-
Coord C1 exon
chr19:42747497-42747590
Coord A exon
chr19:42747347-42747420
Coord C2 exon
chr19:42742508-42742663
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGATTTGGTTCCAGGGT
3' ss Score
8.36
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG
Seq A exon
GGTTCAAGTTCTCCCGAGCATCCTATCTCCTGAGCCTACTGAGGCCACAGATTTGCACAGACCTGGAGCTGAAG
Seq C2 exon
AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224-'4-11,'4-7,5-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(53.4=100)
A:
PF134501=NAD_binding_8=PD(25.9=60.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTCACGGAGGAGATCAT
R:
GCATCCTTCCGTGAGAACTGA
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types