GgaEX1047486 @ galGal4
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21794644-21797899:+
Coord C1 exon
chr6:21794644-21794812
Coord A exon
chr6:21795460-21795533
Coord C2 exon
chr6:21797779-21797899
Length
74 bp
Sequences
Splice sites
3' ss Seq
CACCACCCCGTGTTCTCCAGGCT
3' ss Score
6.61
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGAAAGCAAAGTCCAGGAGCTACCAGCACAGCACAGAGATGTTGGCTGGGCTCCGTGCATGCCTGGGTGCAGGCTGTGCTGCCCACGGGCTGCGGGGGCATCGCCTGGCTCATAGTAGGACCACAGAAAAGCTGCAGCGAGAGTATGATGCCGTGGTGATCGGGGCAG
Seq A exon
GCTTTAGGTTCTCCAGGGCTTCCTACCTGCTCAGCCTGCTGCGCCCGCAGATCTACACAGAGCTGGAGCTGCAG
Seq C2 exon
AACATCTTTCATGGAGGGATGTCTCTGGACCAGCTCTACTTCACCCGGCCAGCACCATCCTACTCGACCTACCAGTCTCCAGTCCCAGGCTTATACCTGTGCGGGAGCGGAGCCCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014_MULTIEX1-3/13=C1-C2
Average complexity
C3
Mappability confidence:
98%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=7.0)
A:
PF134501=NAD_binding_8=PD(32.8=84.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACAGAGATGTTGGCTG
R:
AGAGCTGGTCCAGAGACATCC
Band lengths:
178-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]