DreEX6063025 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42580591-42595017:-
Coord C1 exon
chr13:42594771-42595017
Coord A exon
chr13:42584189-42584258
Coord C2 exon
chr13:42580591-42580709
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCTTTTTTTCTGCAGGAG
3' ss Score
11.3
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CATGTTCTCATACGGCGGGATCTCAGCACACATCAGCGCTAACAGACTGAAGGCGGATGGCGCAGGCTCTTTTGAGCAGGCTTTACACTTCCAGAACCAGGACTACGAGGCCCTCAGACAGGAGTGTTTAGAGGGAGGCTACCTGTTTGAAGACCCCTGTTTCCCCGCCGAACCGCCCTCTCTGGGCTTCAAAGAGCTCGCCCCGCACTCCTCCAAAACCCGAGATGTGGAGTGGATGCGCCCTACG
Seq A exon
GAGCTCTGTGATGATCCTCAGTTCATTGTTGGAGGAGCCACACGCACAGACATCTGTCAAGGAGCTCTGG
Seq C2 exon
GTGACTGCTGGCTCCTCGCTGCGATTGGCTCGCTGACTCTTAATGAAAGACTCCTTCACAGGGTTGTCCCTCATGGCCAGAGCTTTCAAGATGACTATGCTGGAATTTTCCACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'1-6,'1-3,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=41.5)
A:
PF0064816=Peptidase_C2=FE(7.7=100)
C2:
PF0064816=Peptidase_C2=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCTGTTTGAAGACCCC
R:
GGACAACCCTGTGAAGGAGTC
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]