DreEX6063031 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42561684-42563264:-
Coord C1 exon
chr13:42563225-42563264
Coord A exon
chr13:42563071-42563136
Coord C2 exon
chr13:42561684-42561741
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGGCTGCATTTCTTCTGCAGGAA
3' ss Score
10.14
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
GGAATTGGATGACGAGATTTCAGCTGACCTGGAGGATGAG
Seq A exon
GAAGAAATTACAGAAGATGACATTGATGACTCCTTTAAGTCCCTGTTTGCCCAGCTGGCTGGAGAG
Seq C2 exon
GATATGGAGATATCTGTTCATGAACTCAAGACTATTCTCAACAGAGTAGTCTCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGATGACGAGATTTCAGCTGA
R:
GTTTGGAGACTACTCTGTTGAGA
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]