RnoEX0016655 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221351301-221352051:-
Coord C1 exon
chr1:221352012-221352051
Coord A exon
chr1:221351445-221351510
Coord C2 exon
chr1:221351301-221351358
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGTTTTGTGTGCAGAAA
3' ss Score
10.37
5' ss Seq
GATGTATGT
5' ss Score
6.31
Exon sequences
Seq C1 exon
GGAACTAGATGACCAGATCCAGGCCAACCTCCCCGATGAG
Seq A exon
AAAGTGCTCTCTGAAGAGGAGATCGATGACAACTTCAAAACCCTGTTCAGCAAGTTAGCAGGGGAT
Seq C2 exon
GACATGGAGATCAGTGTCAAGGAGTTACAGACCATCTTGAACAGAATCATTAGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935-'21-22,'21-21,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
ENSRNOT00000028431fB2330
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGATGACCAGATCCAGGCC
R:
GTTTGCTAATGATTCTGTTCAAGATG
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]