DreEX6003636 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6557775-6558979:-
Coord C1 exon
chr7:6558940-6558979
Coord A exon
chr7:6557918-6557983
Coord C2 exon
chr7:6557775-6557832
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTCTTTCTGTCTAGCAA
3' ss Score
9.15
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
AGAAATGGATGACAAAGTCATGGCTGAAATTCCTGAGGAG
Seq A exon
CAACGTCTTGATGAGAGTCAGATTGACGCTGGTTTTAAGAGTCTGTTCAGACAGCTGGCTGGAGCG
Seq C2 exon
GACATGGAGATCAGTGTGACGGAGCTACAGACGATCCTGAACAGAATCATCGCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAAGTCATGGCTGAAATTCC
R:
TTGGCGATGATTCTGTTCAGGA
Band lengths:
87-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]