GgaEX1012800 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17025836-17026334:-
Coord C1 exon
chr3:17026298-17026334
Coord A exon
chr3:17026135-17026200
Coord C2 exon
chr3:17025836-17025893
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCTCTCTTCTAGACT
3' ss Score
12.89
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GGTTATAGATGATGAAATAGAGGCCAATTTTGAAGAG
Seq A exon
ACTGAGATCGATGAAGATGACATTGAACCTAGCTTCAAAAAGCTTTTTGGGCAGTTGGCAGGAAGC
Seq C2 exon
GATGCAGAGATCTCTGCCTTCGAGCTGCGCAACATCCTGAATAAAATCCTGGCTAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'23-19,'23-18,24-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTATAGATGATGAAATAGAGGCCA
R:
GCTTAGCCAGGATTTTATTCAGGA
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]