BtaEX6067962 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012778 | CAPN2
Description
Bos taurus calpain 2, (m/II) large subunit (CAPN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103086]
Coordinates
chr16:27827614-27830141:+
Coord C1 exon
chr16:27827614-27827650
Coord A exon
chr16:27828571-27828636
Coord C2 exon
chr16:27830084-27830141
Length
66 bp
Sequences
Splice sites
3' ss Seq
GGGTCTCCCTCGCCTTCCAGATT
3' ss Score
9.83
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGTTGTCGACGATGAAATCGAGGCCAACATTGACGAG
Seq A exon
ATTGACATCAGCGAGGATGACATCGATGATGGATTCAGGAGACTGTTCGCCCAGCTGGCCGGAGAG
Seq C2 exon
GACGCAGAGATTTCTGCCTTTGAGTTGCAGACAATCCTGAGAAGAGTGCTAGCAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012778-'17-15,'17-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGAGGCCAACATTGACGA
R:
CTTTGCTAGCACTCTTCTCAGGA
Band lengths:
79-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]