MmuEX6029810 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182477251-182479742:-
Coord C1 exon
chr1:182479706-182479742
Coord A exon
chr1:182478548-182478613
Coord C2 exon
chr1:182477251-182477308
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCACTCGCCTTCTAGATT
3' ss Score
9.69
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGCTGTTGATGACGAGATCGAGGCCAACATTGAAGAG
Seq A exon
ATTGACGCCAATGAGGAGGACATTGACGATGGATTCCGAAGGCTCTTTGTTCAGCTGGCTGGAGAG
Seq C2 exon
GATGCAGAGATCTCTGCCTTTGAGCTGCAGACCATCTTAAGAAGAGTTCTAGCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'25-31,'25-30,28-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
ENSMUST00000068505fB6988
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTGATGACGAGATCGA
R:
GTTTGGCTAGAACTCTTCTTAAGATG
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types