MmuEX6029810 @ mm9
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:184407382-184409873:-
Coord C1 exon
chr1:184409837-184409873
Coord A exon
chr1:184408679-184408744
Coord C2 exon
chr1:184407382-184407439
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCACTCGCCTTCTAGATT
3' ss Score
9.69
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGCTGTTGATGACGAGATCGAGGCCAACATTGAAGAG
Seq A exon
ATTGACGCCAATGAGGAGGACATTGACGATGGATTCCGAAGGCTCTTTGTTCAGCTGGCTGGAGAG
Seq C2 exon
GATGCAGAGATCTCTGCCTTTGAGCTGCAGACCATCTTAAGAAGAGTTCTAGCCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'17-15,'17-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTGATGACGAGATCGA
R:
GTTTGGCTAGAACTCTTCTTAAGATG
Band lengths:
95-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: