HsaEX6002894 @ hg19
Exon Skipping
Gene
ENSG00000014216 | CAPN1
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:1476]
Coordinates
chr11:64974251-64975733:+
Coord C1 exon
chr11:64974251-64974290
Coord A exon
chr11:64975526-64975591
Coord C2 exon
chr11:64975676-64975733
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCCTTCTCGGTCCAGCAA
3' ss Score
7.41
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGAGCTGGATGACCAGATCCAGGCCAATCTCCCCGATGAG
Seq A exon
CAAGTGCTCTCAGAAGAGGAGATTGACGAGAACTTCAAGGCCCTCTTCAGGCAGCTGGCAGGGGAG
Seq C2 exon
GACATGGAGATCAGCGTGAAGGAGTTGCGGACAATCCTCAATAGGATCATCAGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000014216-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGATCCAGGCCAATCT
R:
GTTTGCTGATGATCCTATTGAGG
Band lengths:
89-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)