BtaEX6103360 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010230 | CAPN1
Description
Bos taurus calpain 1, (mu/I) large subunit (CAPN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174259]
Coordinates
chr29:44085626-44086436:+
Coord C1 exon
chr29:44085626-44085665
Coord A exon
chr29:44086234-44086299
Coord C2 exon
chr29:44086379-44086436
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCCCCACCTTCCCTCTCCAGCAA
3' ss Score
10.1
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGAGCTGGATGACCAGGTCCAGGCCAATCTCCCCGACGAG
Seq A exon
CAAGTGCTCTCAGAAGAGGAGATTGATGAGAACTTCAAGTCCCTCTTCAGACAACTGGCAGGGGAG
Seq C2 exon
GACATGGAGATCAGCGTCAAGGAGCTGCGGACCATCCTCAACAGGATCATCAGCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010230-'20-18,'20-17,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCAGGTCCAGGCCAATC
R:
TTGCTGATGATCCTGTTGAGG
Band lengths:
88-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]