DreEX6064146 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7234424-7240146:+
Coord C1 exon
chr18:7234424-7234601
Coord A exon
chr18:7237094-7237308
Coord C2 exon
chr18:7239957-7240146
Length
215 bp
Sequences
Splice sites
3' ss Seq
TGCTGACTTTGATTCCTCAGGCA
3' ss Score
7.4
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CCCGGTGAGACGTGGATGCTGGCAGACGGCTGTCACTCAGTGCTGTGCAACCCATCCGGCACAATAACAATGCAGAGCCACCGTATCAACTGCGAGAAGATGGAGCCTCCCGTCTGTAAAAACAACCTCCCAGCCCTGCGCTACAATCACCACTGCGGTTGTACCTGGACCTGCCCCT
Seq A exon
GCAGTTGCATGGGCAGCTCCACTAGCCACGTGGTGTCGTTTTCGGGGGCGGCCCTAAAGGTGAAATCTGCCTGCTCCTATTTGCTGCTTCGCTCAGGGGGGGCGGAGCTAGTTTTACATACGACTGCCTGTCAAAGCTCACCCAATCAGATCTGCATGAAGAGCCTGGAGCTGAGGGAAGGCGGGACCAGTGTGGTGCTTCAGGATGACATGAAG
Seq C2 exon
GTGACTGTGGGCGGTGTTTTGACTGCAGTCCCGTTCAGAACTGAGCGAGTGACTGTGACACAAATTGGCTCCATCCTTCACCAGCTGAGATCTGAGCAGCACGGCTTCACACTCACCTTCACTCCTCACAGCAATGAGTTCATGCTCAATATGGACATCGCCATGAAGCCCAACACCACCGGCTTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231-'34-38,'34-37,36-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(48.6=95.8)
C2:
PF0009420=VWD=PD(41.8=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCCATCCGGCACAATAA
R:
GGCTTCATGGCGATGTCCATA
Band lengths:
302-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]