GgaEX1063606 @ galGal3
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
NA
Coordinates
chr1:76603992-76612270:-
Coord C1 exon
chr1:76612093-76612270
Coord A exon
chr1:76605135-76605355
Coord C2 exon
chr1:76603992-76604184
Length
221 bp
Sequences
Splice sites
3' ss Seq
CATTATTTGTTGATTTACAGGTG
3' ss Score
9.24
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
CCTGGTGACAAATGGACATTACCAGATCAATGCCACACTGTGACGTGCTTTCCAGGTGATTACACAGTCTTGGAGAGTCACCAAATTAACTGTGAGAGGATGCCAAAACCTGTGTGTCACAGCAATCTTCCTGCTGTTAAGGTTGAAGAGACTTGTGGCTGCCGATGGATGTGTCCAT
Seq A exon
GTGTCTGTATGGGAAGTTCATCTCGACACATTGTCACTTTTGATGGGCTTAATTTTAAGCTCACCAGCAATTGCTCCTACACCTTGTTTCAGGATATAAAACATGATGTTGAAGTTCTTCTCCATGAAGGACCATGCAAAGCTATACCAAAGATGAACTGTATGGATGCTATTGAAGTGAAACATCGTGGTGTATCCATTCAGCTCTTCAGTAATATGACA
Seq C2 exon
GTGTCTGTTGATGGTGAAAGTATTCATATTCCCTACTCTAGCAGTTTGTTTGAAGTCACTGTCTATGGAGCAATAATGCATGAAATCAAGTTCTCCCATCTTCGTCATAATCTCACATTTACTCCAAGAAATAATGAATTTATTCTTAAACTTAATCCAAAGAGCTTTTCTTCAGAAACACAAGGGCTTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'35-44,'35-43,36-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(46.4=95.9)
C2:
PF0009420=VWD=FE(41.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTCTTGGAGAGTCACCA
R:
GCCCTTGTGTTTCTGAAGAAAAGC
Band lengths:
304-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]