BtaEX6024541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104685348-104691146:+
Coord C1 exon
chr5:104685348-104685525
Coord A exon
chr5:104688849-104689069
Coord C2 exon
chr5:104690960-104691146
Length
221 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCTTTCTCGCCCAGGTG
3' ss Score
10.4
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CCTGGGGACGTCTGGACCTTGCTGGATCAGTGCCACACGGTGACTTGCCTGCCAGATGGCCAGACCTTGCTGAAGAGTCACCGGGTCAACTGCGATCAGGGGCCACAGCCATCATGCCCCGACGGCCAGACCCCGCTCAGGATGGAGGAAGCCTGTGGCTGCCGCTGGGCCTGTCCCT
Seq A exon
GTGTGTGCACAGGCAGCTCCACTCGGCACATCGTGACCTTTGATGGACGGAATTTCAAGCTGACCGGCAACTGCTCATATGTTCTGTTTCACAACAAGGAGCAGGACTTGGAGGTGATTCTCCATAATGGATTCTGCAGCGCTGGGGCGAGGCAGGCCTGCATGAAATCTGTGGAGGTGAAGCAGAACGGCCTCTCGGTTGAGCTCCGCAGCAACATGGAG
Seq C2 exon
GTGATGGTGAATGGGAGACTGGTCTCTGTCCCTTACCTGGGTGGGGACATGGAGGTCAGAGTCTATGGTACCATCATGTTCGAGGTCAGATTCATGGGCCACATCCTCTCCTTCACCCCACAAAACAACGAGTTCCAGCTGCAGCTGAGGCCCAAGATCTTTGCCTCAAAGACGTATGGTCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'39-38,'39-37,40-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(47.0=95.9)
C2:
PF0009420=VWD=FE(41.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCAGACCTTGCTGAAG
R:
TTGAGGCAAAGATCTTGGGCC
Band lengths:
293-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]