MmuEX0051692 @ mm10
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125649117-125656808:+
Coord C1 exon
chr6:125649117-125649294
Coord A exon
chr6:125655032-125655252
Coord C2 exon
chr6:125656616-125656808
Length
221 bp
Sequences
Splice sites
3' ss Seq
CATTGGCTTTCCCCACTCAGGTG
3' ss Score
8.83
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCTGGGGATGTCTGGACCTTGCCGGATCAGTGCCACACAGTGACTTGCTTGGCAAATGGCCAGACCTTGCTGCAGAGTCATCGTGTCAATTGTGACCATGGACCCCGGCCTTCATGTGCCAACAGCCAGTCTCCTGTTCGGGTGGAGGAGACGTGTGGCTGCCGCTGGACCTGCCCTT
Seq A exon
GTGTGTGCACGGGCAGTTCCACTCGGCACATCGTCACCTTCGATGGGCAGAATTTCAAGCTTACTGGTAGCTGCTCCTATGTCATCTTTCAAAACAAGGAGCAGGACCTGGAAGTGCTCCTCCACAATGGGGCCTGCAGCCCCGGGGCAAAACAAGCCTGCATGAAGTCCATTGAGATTAAGCATGCTGGCGTCTCTGCTGAGCTGCACAGTAACATGGAG
Seq C2 exon
ATGGCAGTGGATGGGAGACTGGTCCTTGCCCCGTACGTTGGTGAAAACATGGAAGTCAGCATCTACGGCGCTATCATGTATGAAGTCAGGTTTACCCATCTTGGCCACATCCTCACATACACGCCACAAAACAACGAGTTCCAACTGCAGCTTAGCCCCAAGACCTTTGCTTCGAAGATGCATGGTCTTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(46.4=95.9)
C2:
PF0009420=VWD=FE(41.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTGACTTGCTTGGCAA
R:
GGCTAAGCTGCAGTTGGAACT
Band lengths:
301-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types