RnoEX0098738 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158182480-158189461:+
Coord C1 exon
chr4:158182480-158182657
Coord A exon
chr4:158187665-158187885
Coord C2 exon
chr4:158189269-158189461
Length
221 bp
Sequences
Splice sites
3' ss Seq
TACTTGCTTCCCCCACTCAGGTG
3' ss Score
7.86
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCTGGAGACGTCTGGACCTTGCCAGATCAGTGCCACACAGTGACTTGCTTGGCAAATGGTCAGACCTTGTTGCAGAGTCATCGGGTCAATTGTGACCATGGACCCCGGCCTTCATGTTCCAACAGCCAGTCTCCCGTTCGGGTGGAGGAGACCTGTGGCTGCCGCTGGACCTGCCCTT
Seq A exon
GTGTGTGCACGGGCAGTTCCACTCGGCACATCGTCACCTTCGATGGACAGAATTTCAAGCTTACCGGCAACTGCTCCTACGTCATCTTTCAAAACAAGGAGCAGGACCTGGAAGTGGTCCTCCATAATGGGGCCTGCAGCCCTGGGGCCGTGCAAACCTGCATGAAGACCATCGAGGTTAAGCATGCTGGCCTCTCTGTTGAGCTGCGCAGTGACATGGAG
Seq C2 exon
ATGGCAGTGAATGGGAGACCCGTCCTTGCCCCGTACGTGGGTGGAAATATGCAAGTCAGCATCTATGGTGCTATCATGTATGAAGTCAGGTTCACCCATCTTGGTCACACTCTCACATTTACTCCACAAAACAACGAGTTCCAACTGCAGCTTAGCCCCAAGACCTTTGCTTCGAAGATGTATGGTCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'41-39,'41-38,42-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(46.4=95.9)
C2:
PF0009420=VWD=FE(41.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTGACTTGCTTGGCAA
R:
GGCTAAGCTGCAGTTGGAACT
Band lengths:
301-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]