DreEX6064149 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7228401-7229471:+
Coord C1 exon
chr18:7228401-7228544
Coord A exon
chr18:7228646-7228789
Coord C2 exon
chr18:7229307-7229471
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTATTCCTCCGTCTCTGCAGGAG
3' ss Score
10.58
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTCGTAATGACACGCAGGTGGCGGTGATGGTGTACGGGGCGAAATCAGCAGTGGCGGTCACATGGAGAGATGAACAGACACAAGACAACCTTCTCAAGCTGCTGGAATCTCTACACGGCAAAACAGACAACCAGCCACGACTGG
Seq A exon
GAGCTGCTCTGCGATTGGCCGTACAGACAGCAGTTTCCTCCACCAGCGGGGCAAGGATGGGCATCCCTAAAGCTGTGGTTATGGTGGTGACGGACAGGTCAATAGACTCAGTGCAAGAGGCAGCAAATGAGGCTCTGACTGCTG
Seq C2 exon
GTGTGTCGGTGTTTCCTATTGGTCTGGGTAAGCAGTATGATCAGATTGAAGTGAACACACTCGCAGGCCCACAGGCTCAGGAAAACGTCATTCTGCTCGGCAGCACAGAGTATCTGCTTTCCATGGCTGCGTTTGACCAGTCCTTCCCTGACAAACTCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231-'29-34,'29-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(28.1=100)
A:
PF0009223=VWA=FE(28.1=100)
C2:
PF0009223=VWA=PD(25.7=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGTACGGGGCGAAATC
R:
CGCAGCCATGGAAAGCAGATA
Band lengths:
250-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]