GgaEX1063611 @ galGal3
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
NA
Coordinates
chr1:76619220-76632457:-
Coord C1 exon
chr1:76632314-76632457
Coord A exon
chr1:76620221-76620364
Coord C2 exon
chr1:76619220-76619384
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATTTATATTTTTATTCTTAGGCA
3' ss Score
7.86
5' ss Seq
ACAGTAAAT
5' ss Score
1.91
Exon sequences
Seq C1 exon
GCAATACATCAGTTCATGTGTCTGTTCTCCAGTATGCCAGGGAAAATAATCTAGAAATTTCACTGAACAAGCCTCAGGAGACTGAAAAACTTATTGAGATGGTGCACTCAATTCAACAGAGGGAACAAGGTCCTACTAGATTGG
Seq A exon
GCAAAGCCATTGACTTTGTAGTTCAGAATGCATTGTCAGAATCCTATGGAGGGAGACCCGACGCATCGAAGGTGGTAATTGTCATTGTGTCAGGGAAATCAGAAGACACCGTGGAGACTGCTGCACTCACTGCAAGAATGAACA
Seq C2 exon
AGGTGTCCCTGTTTCCTATTGGAGTTGGGAATGGATATGATGAACAACAACTCAGGACTCTGACTGGGCCATCAGCTGTTAATAGAATCATGAAGCTCCAGAATTTTGAAGATTTATCCACTATGGTCACATTAAATAGTGAATTTATCAATAAAGTGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'30-37,'30-36,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.020 C2=0.062
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(27.0=100)
A:
PF0009223=VWA=FE(27.0=100)
C2:
PF0009223=VWA=PD(27.0=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTCCAGTATGCCAGGGA
R:
TGTGACCATAGTGGATAAATCTTCA
Band lengths:
253-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]