MmuEX0051689 @ mm10
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125645842-125647909:+
Coord C1 exon
chr6:125645842-125645982
Coord A exon
chr6:125646253-125646396
Coord C2 exon
chr6:125647745-125647909
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCCCATTCTTTCCTCTCAGGGG
3' ss Score
10.24
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GGCCCCACCTCACACAGGTGTCCGTGATACAGTATGGAAGCATCAATACCATTGATGTACCATGGAATGTGGTTCAGGAGAAAGCCCATCTACAGAGTTTGGTGGACCTCATGCAGCAGGAGGGTGGCCCCAGCCAGATTG
Seq A exon
GGGATGCTCTGGCCTTTGCCGTGCGCTATGTAACTTCACAAATCCACGGAGCCAGGCCTGGGGCCTCCAAAGCAGTGGTCATCATCATCATGGATACCTCCTTGGATCCCGTGGACACAGCAGCAGATGCTGCCAGATCCAACC
Seq C2 exon
GAGTGGCAGTGTTTCCCGTTGGGGTTGGGGATCGGTATGATGAAGCCCAGCTGAGGATCTTGGCAGGCCCTGGGGCCAGCTCCAATGTGGTAAAGCTCCAGCAAGTTGAAGACCTCTCCACCATGGCCACCCTGGGCAACTCCTTCTTCCACAAACTGTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'57-56,'57-54,58-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(26.9=100)
A:
PF0009223=VWA=FE(27.4=100)
C2:
PF0009223=VWA=PD(26.3=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGGTGTCCGTGATACA
R:
GGTCTTCAACTTGCTGGAGCT
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types