MmuEX0051689 @ mm9
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor homolog [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125595860-125597927:+
Coord C1 exon
chr6:125595860-125596000
Coord A exon
chr6:125596271-125596414
Coord C2 exon
chr6:125597763-125597927
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATCCCATTCTTTCCTCTCAGGGG
3' ss Score
10.24
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GGCCCCACCTCACACAGGTGTCCGTGATACAGTATGGAAGCATCAATACCATTGATGTACCATGGAATGTGGTTCAGGAGAAAGCCCATCTACAGAGTTTGGTGGACCTCATGCAGCAGGAGGGTGGCCCCAGCCAGATTG
Seq A exon
GGGATGCTCTGGCCTTTGCCGTGCGCTATGTAACTTCACAAATCCACGGAGCCAGGCCTGGGGCCTCCAAAGCAGTGGTCATCATCATCATGGATACCTCCTTGGATCCCGTGGACACAGCAGCAGATGCTGCCAGATCCAACC
Seq C2 exon
GAGTGGCAGTGTTTCCCGTTGGGGTTGGGGATCGGTATGATGAAGCCCAGCTGAGGATCTTGGCAGGCCCTGGGGCCAGCTCCAATGTGGTAAAGCTCCAGCAAGTTGAAGACCTCTCCACCATGGCCACCCTGGGCAACTCCTTCTTCCACAAACTGTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'42-42,'42-40,43-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(26.9=100)
A:
PF0009223=VWA=FE(27.4=100)
C2:
PF0009223=VWA=PD(26.3=82.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGGTGTCCGTGATACA
R:
GGTCTTCAACTTGCTGGAGCT
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: