RnoEX6015166 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158179491-158181276:+
Coord C1 exon
chr4:158179491-158179631
Coord A exon
chr4:158179917-158180060
Coord C2 exon
chr4:158181112-158181276
Length
144 bp
Sequences
Splice sites
3' ss Seq
GGACCGTTCTCTGCTCTCAGGGA
3' ss Score
8.74
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
GGCCCCATCTCACTCAGGTGTCCGTGATACAATACGGAAGCATCAATACCATCGATGTACCGTGGAATGTGGCCCAGGAGAAAGCCTATCTACAGAGTTTGGTGGACCTCATGCAGCAGGAGGGCGGCCCCAGCCAGATTG
Seq A exon
GGAATGCTCTGGCCTTTGCCGTGCGCTATGTAACTTCACAGATCCATGGAGCCAGGCCTGGAGCCTCCAAAGCAGTGGTCATGATCATCATGGATACCTCCTTGGATTCGGTGGACACAGCAGTGGATGCTGCCAGATCCAACC
Seq C2 exon
GGGTGGCAGTGTTCCCCATTGGGGTTGGGGATCGATATGATGAAGCCCAGCTGAGGATCTTGGCAGGCCCTGGGGCCAGCTCCAATGTGGTAAAGCTCCAGCAAGTTGAAGACCTCCTCACCATGGTCACCCCGGGAAACTCCTTCTTCCACAGACTGTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'37-35,'37-34,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(27.2=100)
A:
PF0009223=VWA=FE(27.7=100)
C2:
PF0009223=VWA=PD(25.4=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACTCAGGTGTCCGTGAT
R:
GGTCTTCAACTTGCTGGAGCT
Band lengths:
248-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]