DreEX6064228 @ danRer10
Exon Skipping
Gene
ENSDARG00000058546 | si:dkey-30c15.12
Description
si:dkey-30c15.12 [Source:ZFIN;Acc:ZDB-GENE-060503-920]
Coordinates
chr18:7458107-7461081:-
Coord C1 exon
chr18:7460915-7461081
Coord A exon
chr18:7458385-7458513
Coord C2 exon
chr18:7458107-7458292
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTTGTTTGCAACAGACT
3' ss Score
8.26
5' ss Seq
TATGTGACT
5' ss Score
-0.24
Exon sequences
Seq C1 exon
ATACACCTGTTATGCAAGTGACGGCAGAGGATTTGGACGACCCCACATCTTCAAACAGCATTGTGCGTTACAAACTGCTGAAACAGGAGCCCAACAGTGGAGTGTTTCACATTGACCAAACCACTGGAGTCATCAGTCTGGCATTGATGGGTATTCTGGATAGAGAG
Seq A exon
ACTGATGCTGTATATAACCTGGCTGTTGAAGCAGCAGATATGGATGGTCACGGTCTTTCATCCACCTGCATGGTTGCCATCAAAATCACTGATAGCAATGATCATCGACCGCTGTTCAGCCAAGAATAT
Seq C2 exon
TATGCTGAAACAGTGAAGGAAAATAAAGCTGGAGAAGTTGTTGCCAGGCTCACCGTCACTGATAAAGATGAGCCTCTTACTGTTAACGCCCTGTCGAAGTTTACCATCATCCAAGGCAATGATAGAGGGTTCTTCAACATCAGTACTGACCACAATGGGATGGACGGCATCATCACTACATTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058546-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(56.7=100)
A:
PF0002812=Cadherin=PD(30.9=68.2)
C2:
PF0002812=Cadherin=PU(61.0=96.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTGGACGACCCCACATC
R:
GGTAAACTTCGACAGGGCGTT
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]