DreEX6066994 @ danRer10
Exon Skipping
Gene
ENSDARG00000100991 | chrna3
Description
cholinergic receptor, nicotinic, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070822-1]
Coordinates
chr18:50643819-50648581:+
Coord C1 exon
chr18:50643819-50643863
Coord A exon
chr18:50646531-50646640
Coord C2 exon
chr18:50647543-50648581
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTATTTGAATTTTTTACAGATT
3' ss Score
7.86
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GACGAGGTGAACCAGATTATGGAGACCAATCTTTGGCTGAGACAC
Seq A exon
ATTTGGAATGACTATAAGCTCCGATGGGATCCCAAGGATTTTGGAGGTGTTGAGTTCATCCGTGTGCCGTCCAACAAGATTTGGAAGCCAGACATTGTGTTGTATAACAA
Seq C2 exon
TGCGGTGGGAGATTTCCAGGTGGACGATAAAACCAAAGCCCTTCTGCGCTTCAATGGAGACGTGACCTGGATCCCACCGGCCATCTTCAAGAGCTCCTGCAAGATCGACGTCACCTACTTCCCCTTCGACTACCAGAACTGCACCATGAAGTTTGGCTCGTGGACCTACGACAAGGCCAAGATCGACCTGGTGCTCATCGGCTCCACCATCAACCTGAAGGACTTCTGGGAGAGCGGAGAATGGACGATCATCGACGCTCCAGGATATAAACACGACATTAAATACAACTGCTGTGAGGAGATCTACACGGACATCACGTATTCACTGTACATCCGCCGATTACCGCTCTTCTACACCATCAACATGATCATCCCCTGTCTTCTCATCTCCTTCCTGACCGTTCTCGTATTCTACCTGCCCTCCGACTGCGGAGAGAAAGTCACTTTATGCATTTCCGTCCTCCTGTCGCTCACTGTATTTCTTCTGGTCATCACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100991-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=47.1),PF0293211=Neur_chan_memb=PU(48.8=49.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]