MmuEX6066067 @ mm9
Exon Skipping
Gene
ENSMUSG00000032303 | Chrna3
Description
cholinergic receptor, nicotinic, alpha polypeptide 3 [Source:MGI Symbol;Acc:MGI:87887]
Coordinates
chr9:54863213-54871997:-
Coord C1 exon
chr9:54871953-54871997
Coord A exon
chr9:54869986-54870095
Coord C2 exon
chr9:54863213-54863955
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCCCACCTCCTTTGGTCAGATC
3' ss Score
7.08
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GATGAAGTAAACCAGATCATGGAAACCAACCTGTGGCTGAAGCAA
Seq A exon
ATCTGGAATGACTACAAGCTGAAATGGAAACCCTCTGACTACCAAGGGGTGGAGTTCATGCGAGTCCCTGCAGAGAAGATCTGGAAACCAGACATCGTGCTTTACAACAA
Seq C2 exon
CGCCGATGGGGATTTCCAAGTGGATGACAAAACCAAAGCTCTACTCAAGTACACAGGAGAAGTGACTTGGATCCCTCCGGCCATCTTTAAGAGCTCATGCAAAATCGATGTGACCTACTTCCCGTTTGACTACCAAAACTGCACCATGAAGTTCGGCTCCTGGTCCTACGACAAGGCAAAGATCGACCTGGTCCTCATTGGCTCCTCCATGAACCTCAAGGACTATTGGGAAAGTGGCGAGTGGGCCATCATTAAAGCCCCGGGCTACAAACATGAAATCAAGTACAACTGCTGTGAGGAGATCTACCAAGACATCACGTACTCGCTATACATTCGCCGCCTGCCGCTGTTCTACACCATCAACCTCATCATTCCGTGCCTGCTCATCTCCTTCCTCACTGTGCTCGTCTTCTACCTGCCCTCCGACTGTGGGGAGAAGGTGACGCTCTGCATCTCCGTGCTCCTCTCCCTGACGGTCTTTCTCCTCGTGATCACCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032303-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=46.2),PF0293211=Neur_chan_memb=WD(100=50.6),PF0293211=Neur_chan_memb=PU(20.9=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCTGTGGCTGAAGCAA
R:
TCCTTGAGGTTCATGGAGGAGC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: