GgaEX1015438 @ galGal3
Exon Skipping
Gene
ENSGALG00000003014 | F1NWY0_CHICK
Description
NA
Coordinates
chr10:4565256-4568759:+
Coord C1 exon
chr10:4565256-4565300
Coord A exon
chr10:4566292-4566401
Coord C2 exon
chr10:4567748-4568759
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCATTTCTTCCTTAATTAGATC
3' ss Score
7.97
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GACGAAGTCAACCAGATCATGGAGACCAACCTGTGGCTGAAGCAC
Seq A exon
ATCTGGAATGATTACAAGCTTCGGTGGAATCCAGTGGATTATGGAGGTGCTGAATTCATCCGTGTGCCCTCTGGCCAGATCTGGAAGCCAGATATTGTATTATATAACAA
Seq C2 exon
TGCAGTTGGGGATTTCCAGGTTGATGACAAGACAAAGGCCCTACTGAAGTACACGGGTGATGTGACCTGGATACCCCCAGCTATATTTAAAAGCTCATGTAAAATAGATGTGACCTACTTCCCATTTGACTATCAGAACTGCACCATGAAGTTTGGTTCCTGGTCTTATGATAAAGCCAAAATTGACTTGGTTTTAATTGGCTCTACAATGAACCTGAAAGATTACTGGGAGAGTGGAGAATGGGCCATTATTAAAGCTCCCGGGTATAAACATGACATTAAATATAACTGCTGTGAAGAGATCTACACAGACATCACATACTCTCTTTACATTAGACGCTTACCTTTATTTTACACTATCAACATGATTATTCCATGTCTGCTGATCTCTTTTCTGACTGTATTAGTTTTCTATTTGCCCTCAGACTGTGGTGAAAAGGTGACTCTCTGTATATCAGTCCTTCTGTCTTTAACGGTGTTTCTTCTTGTTATCACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003014-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=34.0),PF0293211=Neur_chan_memb=PU(86.7=63.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCTGTGGCTGAAGCAC
R:
CCACTCTCCCAGTAATCTTTCAGG
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]