BtaEX6077431 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013657 | CHRNA5
Description
Bos taurus cholinergic receptor, nicotinic, alpha 5 (CHRNA5), mRNA. [Source:RefSeq mRNA;Acc:NM_174514]
Coordinates
chr21:31488056-31492593:+
Coord C1 exon
chr21:31488056-31488100
Coord A exon
chr21:31489738-31489847
Coord C2 exon
chr21:31491762-31492593
Length
110 bp
Sequences
Splice sites
3' ss Seq
CAGGTTTCTTTGTTTTAAAGGAG
3' ss Score
6.33
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATGAGAAAAATCAGTTAATGACAACCAATGTCTGGTTGAAACAG
Seq A exon
GAGTGGATAGATGTGAAGTTGAGATGGAACCCTGATGACTACGGTGGAATAAAACTTATACGTGTCCCTTCAGACTCTCTCTGGACTCCAGATATCGTTTTGTTTGATAA
Seq C2 exon
TGCAGATGGACGTTTTGAAGGGGCCAGTACCAAAACCGTCGTCAGGTACGACGGCACGGTGACCTGGACTCCACCGGCAAACTACAAAAGTTCATGTACCATCGACGTCACATTTTTCCCATTTGATCTCCAAAACTGTTCCATGAAATTTGGTTCTTGGACTTACGACGGATCACAGGTTGATATAATTTTGGAGGACCAAGATGTAGACAAGAGAGATTTTTTTGATAATGGAGAATGGGAAATTGTCAGCGCAACAGGGAGCAAAGGAAACAGAACCGACAGCTGTTGCTGGTATCCTTACATCACTTACTCGTTTGTAATTAAGCGTCTGCCTCTCTTTTATACCTTGTTCCTCATTATACCCTGTATTGGGCTCTCATTTTTAACTGTACTTGTCTTCTATCTTCCTTCAAATGAAGGTGAAAAGATCTGTCTCTGCACTTCAGTACTTGTGTCTCTGACTGTCTTCCTTCTCGTTATTGAAGAGATCATACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013657-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.9=100)
A:
PF0293118=Neur_chan_LBD=FE(17.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(54.9=40.3),PF0293211=Neur_chan_memb=WD(100=47.8),PF0293211=Neur_chan_memb=PU(57.7=16.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAAAATCAGTTAATGACAACCA
R:
TGTCTACATCTTGGTCCTCCA
Band lengths:
255-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]