GgaEX6007416 @ galGal4
Exon Skipping
Gene
ENSGALG00000003021 | CHRNA5
Description
neuronal acetylcholine receptor subunit alpha-5 precursor [Source:RefSeq peptide;Acc:NP_989746]
Coordinates
chr10:3132179-3135315:-
Coord C1 exon
chr10:3135271-3135315
Coord A exon
chr10:3133984-3134093
Coord C2 exon
chr10:3132179-3133010
Length
110 bp
Sequences
Splice sites
3' ss Seq
TACACCTCTTACATCTACAGGAG
3' ss Score
8.72
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GATGAGAAGAATCAACTGATGACCACGAATGTCTGGCTGAAACAG
Seq A exon
GAGTGGATAGATGTAAAATTAAGATGGAACCCTGAAGATTATGCTGGAATAACATCTATTCGTGTCCCATCAGATTCTATTTGGATTCCAGACATTGTGTTATATGACAA
Seq C2 exon
TGCAGATGGACGTTTTGAGGGGACGTCTACTAAAACTGTGGTAAAATATGATGGCACCATTGCTTGGACTCCACCAGCAAATTATAAAAGTTCTTGTACTATTGACGTAACCTTCTTTCCCTTTGACCTCCAAAACTGCTCTATGAAATTTGGTTCCTGGACTTACGATGGCTCCCAGGTTGATATAATTTTAGAAGATTATGATGTTGACAAAAGAGACTTTTTTGATAATGGAGAATGGGAAATAGTGACTGCAACAGGGAGCAAAGGAAATAGAACTGATGGATGCTGCTGGTATCCCTTTGTTACATATTCATTTATAATTAGACGTTTACCACTTTTTTACACGTTGTTTCTCATCATTCCTTGTATTGGACTTTCTTTTCTAACTGTCCTCGTCTTCTATCTTCCTTCAAATGAAGGTGAAAAAATTTCCCTTTGCACTTCAGTCCTGGTATCTCTGACTGTTTTTCTTCTTGTCATTGAAGAGATTATTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.9=100)
A:
PF0293118=Neur_chan_LBD=FE(17.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(54.9=40.3),PF0293211=Neur_chan_memb=WD(100=48.9),PF0293211=Neur_chan_memb=PU(54.2=14.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGAATCAACTGATGACCACG
R:
AAATTATATCAACCTGGGAGCCATCG
Band lengths:
234-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]