GgaEX6007416 @ galGal3
Exon Skipping
Gene
ENSGALG00000003021 | F1NIT6_CHICK
Description
NA
Coordinates
chr10:4573809-4576945:-
Coord C1 exon
chr10:4576901-4576945
Coord A exon
chr10:4575614-4575723
Coord C2 exon
chr10:4573809-4574640
Length
110 bp
Sequences
Splice sites
3' ss Seq
TACACCTCTTACATCTACAGGAG
3' ss Score
8.72
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GATGAGAAGAATCAACTGATGACCACGAATGTCTGGCTGAAACAG
Seq A exon
GAGTGGATAGATGTAAAATTAAGATGGAACCCTGAAGATTATGCTGGAATAACATCTATTCGTGTCCCATCAGATTCTATTTGGATTCCAGACATTGTGTTATATGACAA
Seq C2 exon
TGCAGATGGACGTTTTGAGGGGACGTCTACTAAAACTGTGGTAAAATATGATGGCACCATTGCTTGGACTCCACCAGCAAATTATAAAAGTTCTTGTACTATTGACGTAACCTTCTTTCCCTTTGACCTCCAAAACTGCTCTATGAAATTTGGTTCCTGGACTTACGATGGCTCCCAGGTTGATATAATTTTAGAAGATTATGATGTTGACAAAAGAGACTTTTTTGATAATGGAGAATGGGAAATAGTGACTGCAACAGGGAGCAAAGGAAATAGAACTGATGGATGCTGCTGGTATCCCTTTGTTACATATTCATTTATAATTAGACGTTTACCACTTTTTTACACGTTGTTTCTCATCATTCCTTGTATTGGACTTTCTTTTCTAACTGTCCTCGTCTTCTATCTTCCTTCAAATGAAGGTGAAAAAATTTCCCTTTGCACTTCAGTCCTGGTATCTCTGACTGTTTTTCTTCTTGTCATTGAAGAGATTATTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.9=100)
A:
PF0293118=Neur_chan_LBD=FE(17.6=100)
C2:
PF0293118=Neur_chan_LBD=PD(54.9=40.3),PF0293211=Neur_chan_memb=WD(100=48.9),PF0293211=Neur_chan_memb=PU(54.2=14.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGAATCAACTGATGACCACG
R:
AAATTATATCAACCTGGGAGCCATCG
Band lengths:
234-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]