GgaEX1015438 @ galGal4
Exon Skipping
Gene
ENSGALG00000003014 | CHRNA3
Description
Neuronal acetylcholine receptor subunit alpha-3 [Source:UniProtKB/Swiss-Prot;Acc:P09481]
Coordinates
chr10:3123626-3127129:+
Coord C1 exon
chr10:3123626-3123670
Coord A exon
chr10:3124662-3124771
Coord C2 exon
chr10:3126118-3127129
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCATTTCTTCCTTAATTAGATC
3' ss Score
7.97
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GACGAAGTCAACCAGATCATGGAGACCAACCTGTGGCTGAAGCAC
Seq A exon
ATCTGGAATGATTACAAGCTTCGGTGGAATCCAGTGGATTATGGAGGTGCTGAATTCATCCGTGTGCCCTCTGGCCAGATCTGGAAGCCAGATATTGTATTATATAACAA
Seq C2 exon
TGCAGTTGGGGATTTCCAGGTTGATGACAAGACAAAGGCCCTACTGAAGTACACGGGTGATGTGACCTGGATACCCCCAGCTATATTTAAAAGCTCATGTAAAATAGATGTGACCTACTTCCCATTTGACTATCAGAACTGCACCATGAAGTTTGGTTCCTGGTCTTATGATAAAGCCAAAATTGACTTGGTTTTAATTGGCTCTACAATGAACCTGAAAGATTACTGGGAGAGTGGAGAATGGGCCATTATTAAAGCTCCCGGGTATAAACATGACATTAAATATAACTGCTGTGAAGAGATCTACACAGACATCACATACTCTCTTTACATTAGACGCTTACCTTTATTTTACACTATCAACATGATTATTCCATGTCTGCTGATCTCTTTTCTGACTGTATTAGTTTTCTATTTGCCCTCAGACTGTGGTGAAAAGGTGACTCTCTGTATATCAGTCCTTCTGTCTTTAACGGTGTTTCTTCTTGTTATCACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003014-'2-6,'2-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=34.0),PF0293211=Neur_chan_memb=PU(86.7=63.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCTGTGGCTGAAGCAC
R:
CCACTCTCCCAGTAATCTTTCAGG
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]