BtaEX6077435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003130 | CHRNA3
Description
Bos taurus cholinergic receptor, nicotinic, alpha 3 (neuronal) (CHRNA3), mRNA. [Source:RefSeq mRNA;Acc:NM_174719]
Coordinates
chr21:31505331-31512660:-
Coord C1 exon
chr21:31512616-31512660
Coord A exon
chr21:31511404-31511513
Coord C2 exon
chr21:31505331-31506342
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTCCGCCTCCTCCCCCCAGATC
3' ss Score
13.09
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GATGAAGTAAACCAGATCATGGAGACTAACCTGTGGCTCAAGCAA
Seq A exon
ATCTGGAACGACTACAAGCTGAAGTGGAACCCGTCCGACTACGACGGGGCCGAGTTCATGCGCGTCCCTGCGCAGAAGATCTGGAAGCCAGACATTGTACTGTACAACAA
Seq C2 exon
TGCTGTTGGGGATTTCCAAGTGGACGACAAGACCAAAGCTTTACTCAAGTACACGGGGGAAGTGACTTGGATCCCCCCAGCCATCTTTAAGAGCTCATGCAAAATCGACGTGACCTACTTCCCGTTTGATTACCAGAACTGCACCATGAAGTTCGGTTCCTGGTCCTACGACAAGGCAAAAATCGACCTGGTCCTGATCGGCTCCTCCATGAACCTCAAGGACTACTGGGAGAGCGGCGAGTGGGCCATCATCAAAGCCCCTGGCTACAAGCACGACATCAAGTACAACTGCTGCGAGGAGATCTACCCGGACATCACCTACTCGCTCTACATCCGGCGCCTGCCCCTGTTCTACACCATCAACCTCATCATCCCCTGCCTGCTCATCTCCTTCCTGACTGTGCTCGTCTTCTACCTGCCTTCCGACTGCGGTGAGAAGGTGACCCTCTGCATCTCGGTGCTCCTCTCCTTGACCGTGTTTCTCCTGGTGATCACCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003130-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
88%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=34.0),PF0293211=Neur_chan_memb=PU(86.7=63.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTAACCTGTGGCTCAAGCA
R:
CGCTCTCCCAGTAGTCCTTGA
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]