DreEX6067933 @ danRer10
Exon Skipping
Gene
ENSDARG00000013079 | tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
Coordinates
chr12:9148979-9150725:+
Coord C1 exon
chr12:9148979-9149155
Coord A exon
chr12:9149242-9149401
Coord C2 exon
chr12:9150518-9150725
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACATTTCATTTTGTTTCCAGTCT
3' ss Score
7.06
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
ACTTTAAAGTTCCTGCAGCAGAATTCCAAGGAGAGATCAGAAATGTCTGCCAATGCAGCATCCAGCACCACTGCATCATATAGCATTCCTGCAACCAGCAGCAAAATGTCCATGCAAGAACTGGAGGAATTGCGCAAAAAGCTGGGAAATGTCACAGCCAGTTCCAATGTACCACAG
Seq A exon
TCTTCTGAGGTCATCCGTAAAATGCTGAGAGACCGTCATAACAAGAAGAACCCCACTCAGCCCAACCCTGTGTTTCCAAACTGGGTGTATGACCGGCCTTCTCTGATTGGGGATTTCATCACTAACCCCACCCCTGTCGGAGATCCTGTTGTGGCTATTG
Seq C2 exon
GCACAATGCCGCTGGCTGCACAGGAACAAGCTCTGGTTGAGGATCTGCTGTATGTTCTGATTGGTGTGGATGGGAGAGACATCACAGCTCAGCCAGTGCTTGGCAGACAGAGCCGATCGTTCATTGTAGATCCTTCTCTCGATTTGTCCGTCAAAGAGCTGGTCAACAGGATATTACCAGTCGCATCTTGTTACTCCACCATCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013079-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=0.481 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGCAAAATGTCCATGC
R:
TGTTGACCAGCTCTTTGACGG
Band lengths:
251-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]